Index

A

aind_behavior_services.base module aind_behavior_services.calibration.aind_manipulator module aind_behavior_services.calibration.load_cells module aind_behavior_services.calibration.olfactometer module aind_behavior_services.calibration.treadmill module aind_behavior_services.calibration.water_valve module

aind_behavior_services.data_types module aind_behavior_services.utils module aind_behavior_services_pkg_version (aind_behavior_services.base.SchemaVersionedModel attribute) allow_dirty_repo (aind_behavior_services.session.AindBehaviorSessionModel attribute) ARRAY (aind_behavior_services.data_types.DataType attribute) axis (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) Axis (class in aind_behavior_services.calibration.aind_manipulator) axis_configuration (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibrationInput attribute)

B

baseline (aind_behavior_services.calibration.load_cells.LoadCellCalibrationOutput attribute) (aind_behavior_services.calibration.load_cells.MeasuredOffset attribute) (aind_behavior_services.calibration.load_cells.MeasuredWeight attribute)

bonsai_sgen() (in module aind_behavior_services.utils) BonsaiSgenSerializers (class in aind_behavior_services.utils) BOOLEAL (aind_behavior_services.data_types.DataType attribute) brake_lookup_calibration (aind_behavior_services.calibration.treadmill.TreadmillCalibrationOutput attribute)

C

calibrate_loadcell_output() (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationInput class method) calibrate_output() (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationInput method) (aind_behavior_services.calibration.water_valve.WaterValveCalibrationInput method) calibration (aind_behavior_services.calibration.aind_manipulator.AindManipulatorDevice attribute) (aind_behavior_services.calibration.load_cells.LoadCells attribute) (aind_behavior_services.calibration.olfactometer.Olfactometer attribute) (aind_behavior_services.calibration.treadmill.Treadmill attribute) CARRIER (aind_behavior_services.calibration.olfactometer.OlfactometerChannelType attribute) channel (aind_behavior_services.calibration.load_cells.LoadCellCalibrationInput attribute) (aind_behavior_services.calibration.load_cells.LoadCellCalibrationOutput attribute) Channel0 (aind_behavior_services.calibration.olfactometer.OlfactometerChannel attribute) Channel1 (aind_behavior_services.calibration.olfactometer.OlfactometerChannel attribute) Channel2 (aind_behavior_services.calibration.olfactometer.OlfactometerChannel attribute) Channel3 (aind_behavior_services.calibration.olfactometer.OlfactometerChannel attribute)

channel_config (aind_behavior_services.calibration.olfactometer.CalibrationParameters attribute) (aind_behavior_services.calibration.olfactometer.OlfactometerCalibrationInput attribute) channel_index (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) channel_type (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) channels (aind_behavior_services.calibration.load_cells.CalibrationParameters attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationInput attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationOutput attribute) coerce_schema_version() (in module aind_behavior_services.base) coerce_version() (aind_behavior_services.AindBehaviorTaskLogicModel class method) (aind_behavior_services.base.SchemaVersionedModel class method) commit_hash (aind_behavior_services.session.AindBehaviorSessionModel attribute) computer_name (aind_behavior_services.AindBehaviorRigModel attribute) convert_pydantic_to_bonsai() (in module aind_behavior_services.utils) CustomGenerateJsonSchema (class in aind_behavior_services.utils)

D

data (aind_behavior_services.data_types.SoftwareEvent attribute) data_type (aind_behavior_services.data_types.SoftwareEvent attribute) data_type_hint (aind_behavior_services.data_types.SoftwareEvent attribute) DataType (class in aind_behavior_services.data_types) DataTypes.Config (class in aind_behavior_services.data_types) date (aind_behavior_services.session.AindBehaviorSessionModel attribute) description (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibration attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibration attribute) (aind_behavior_services.calibration.olfactometer.OlfactometerCalibration attribute) (aind_behavior_services.calibration.treadmill.TreadmillCalibration attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibration attribute)

device_name (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibration attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibration attribute) (aind_behavior_services.calibration.olfactometer.OlfactometerCalibration attribute) (aind_behavior_services.calibration.treadmill.TreadmillCalibration attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibration attribute) DYNAMIC (aind_behavior_services.calibration.aind_manipulator.MotorOperationMode attribute)

E

ensure_unique_channels() (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationInput class method) (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationOutput class method) enum_schema() (aind_behavior_services.utils.CustomGenerateJsonSchema method)

experiment (aind_behavior_services.session.AindBehaviorSessionModel attribute) experiment_version (aind_behavior_services.session.AindBehaviorSessionModel attribute) experimenter (aind_behavior_services.session.AindBehaviorSessionModel attribute) export_schema() (in module aind_behavior_services.utils)

F

flow_rate (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) flow_rate_capacity (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) format_datetime() (in module aind_behavior_services.utils) frame_index (aind_behavior_services.data_types.RenderSynchState attribute) (aind_behavior_services.data_types.SoftwareEvent attribute)

frame_timestamp (aind_behavior_services.data_types.RenderSynchState attribute) (aind_behavior_services.data_types.SoftwareEvent attribute) full_flow_rate (aind_behavior_services.calibration.olfactometer.CalibrationParameters attribute) full_step_to_mm (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibrationInput attribute)

G

generate_session_name_default() (aind_behavior_services.session.AindBehaviorSessionModel method) get_commit_hash() (in module aind_behavior_services.base)

get_flattened_oneof() (aind_behavior_services.utils.CustomGenerateJsonSchema method) get_optimum_offset() (aind_behavior_services.calibration.load_cells.LoadCellsCalibrationInput static method)

H

HARP (aind_behavior_services.data_types.TimestampSource attribute) harp_analog_input (aind_behavior_services.calibration.olfactometer.CalibrationRig attribute)

harp_clock_generator (aind_behavior_services.calibration.olfactometer.CalibrationRig attribute) harp_olfactometer (aind_behavior_services.calibration.olfactometer.CalibrationRig attribute) homing_order (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibrationInput attribute)

I

initial_position (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibrationInput attribute) input (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibration attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibration attribute) (aind_behavior_services.calibration.olfactometer.OlfactometerCalibration attribute) (aind_behavior_services.calibration.treadmill.TreadmillCalibration attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibration attribute)

interval_average (aind_behavior_services.calibration.water_valve.WaterValveCalibrationOutput attribute) invert_direction (aind_behavior_services.calibration.treadmill.TreadmillCalibrationOutput attribute)

J

JSON (aind_behavior_services.utils.BonsaiSgenSerializers attribute)

json_schema_extra (aind_behavior_services.data_types.DataTypes.Config attribute)

L

literal_schema() (aind_behavior_services.utils.CustomGenerateJsonSchema method)

load_cells (aind_behavior_services.calibration.load_cells.CalibrationRig attribute)

M

manipulator (aind_behavior_services.calibration.aind_manipulator.CalibrationRig attribute) max_limit (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) maximum_step_interval (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) measurements (aind_behavior_services.calibration.water_valve.WaterValveCalibrationInput attribute) MICROSTEP16 (aind_behavior_services.calibration.aind_manipulator.MicrostepResolution attribute) MICROSTEP32 (aind_behavior_services.calibration.aind_manipulator.MicrostepResolution attribute) MICROSTEP64 (aind_behavior_services.calibration.aind_manipulator.MicrostepResolution attribute) MICROSTEP8 (aind_behavior_services.calibration.aind_manipulator.MicrostepResolution attribute) microstep_resolution (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) MicrostepResolution (class in aind_behavior_services.calibration.aind_manipulator) min_limit (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute)

model_from_json_file() (in module aind_behavior_services.utils) module aind_behavior_services.base aind_behavior_services.calibration.aind_manipulator aind_behavior_services.calibration.load_cells aind_behavior_services.calibration.olfactometer aind_behavior_services.calibration.treadmill aind_behavior_services.calibration.water_valve aind_behavior_services.data_types aind_behavior_services.utils motor_operation_mode (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) MotorOperationMode (class in aind_behavior_services.calibration.aind_manipulator)

N

n_repeats_per_stimulus (aind_behavior_services.calibration.olfactometer.CalibrationParameters attribute) name (aind_behavior_services.calibration.aind_manipulator.CalibrationLogic attribute) (aind_behavior_services.calibration.load_cells.CalibrationLogic attribute) (aind_behavior_services.calibration.olfactometer.CalibrationLogic attribute) (aind_behavior_services.calibration.treadmill.CalibrationLogic attribute) (aind_behavior_services.calibration.water_valve.CalibrationLogic attribute) (aind_behavior_services.data_types.SoftwareEvent attribute)

NONE (aind_behavior_services.calibration.aind_manipulator.Axis attribute) (aind_behavior_services.utils.BonsaiSgenSerializers attribute) notes (aind_behavior_services.session.AindBehaviorSessionModel attribute) NULL (aind_behavior_services.data_types.DataType attribute) (aind_behavior_services.data_types.TimestampSource attribute) nullable_schema() (aind_behavior_services.utils.CustomGenerateJsonSchema method) NUMBER (aind_behavior_services.data_types.DataType attribute)

O

OBJECT (aind_behavior_services.data_types.DataType attribute) ODOR (aind_behavior_services.calibration.olfactometer.OlfactometerChannelType attribute) odorant (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) odorant_dilution (aind_behavior_services.calibration.olfactometer.OlfactometerChannelConfig attribute) offset (aind_behavior_services.calibration.load_cells.LoadCellCalibrationOutput attribute) (aind_behavior_services.calibration.load_cells.MeasuredOffset attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibrationOutput attribute) offset_buffer_size (aind_behavior_services.calibration.load_cells.CalibrationParameters attribute)

offset_measurement (aind_behavior_services.calibration.load_cells.LoadCellCalibrationInput attribute) OlfactometerChannel (class in aind_behavior_services.calibration.olfactometer) OlfactometerChannelType (class in aind_behavior_services.calibration.olfactometer) open_bonsai_process() (in module aind_behavior_services.utils) output (aind_behavior_services.calibration.aind_manipulator.AindManipulatorCalibration attribute) (aind_behavior_services.calibration.load_cells.LoadCellsCalibration attribute) (aind_behavior_services.calibration.olfactometer.OlfactometerCalibration attribute) (aind_behavior_services.calibration.treadmill.TreadmillCalibration attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibration attribute)

P

pascal_to_snake_case() (in module aind_behavior_services.utils)

pulses_per_revolution (aind_behavior_services.calibration.treadmill.TreadmillCalibrationOutput attribute)

Q

QUIET (aind_behavior_services.calibration.aind_manipulator.MotorOperationMode attribute)

R

r2 (aind_behavior_services.calibration.water_valve.WaterValveCalibrationOutput attribute) RENDER (aind_behavior_services.data_types.TimestampSource attribute) render_synch_state (aind_behavior_services.data_types.DataTypes attribute) repeat_count (aind_behavior_services.calibration.water_valve.CalibrationParameters attribute) (aind_behavior_services.calibration.water_valve.Measurement attribute)

rig_name (aind_behavior_services.AindBehaviorRigModel attribute) root_path (aind_behavior_services.session.AindBehaviorSessionModel attribute) run_bonsai_process() (in module aind_behavior_services.utils)

S

screaming_snake_case_to_pascal_case() (in module aind_behavior_services.utils) SemVerAnnotation (class in aind_behavior_services.base) session_name (aind_behavior_services.session.AindBehaviorSessionModel attribute) skip_hardware_validation (aind_behavior_services.session.AindBehaviorSessionModel attribute) slope (aind_behavior_services.calibration.load_cells.LoadCellCalibrationOutput attribute) (aind_behavior_services.calibration.water_valve.WaterValveCalibrationOutput attribute)

snake_to_pascal_case() (in module aind_behavior_services.utils) software_event (aind_behavior_services.data_types.DataTypes attribute) step_acceleration_interval (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) step_interval (aind_behavior_services.calibration.aind_manipulator.AxisConfiguration attribute) STRING (aind_behavior_services.data_types.DataType attribute) subject (aind_behavior_services.session.AindBehaviorSessionModel attribute) sync_quad_value (aind_behavior_services.data_types.RenderSynchState attribute)

T

task_parameters (aind_behavior_services.AindBehaviorTaskLogicModel attribute) (aind_behavior_services.calibration.aind_manipulator.CalibrationLogic attribute) (aind_behavior_services.calibration.load_cells.CalibrationLogic attribute) (aind_behavior_services.calibration.olfactometer.CalibrationLogic attribute) (aind_behavior_services.calibration.treadmill.CalibrationLogic attribute) (aind_behavior_services.calibration.water_valve.CalibrationLogic attribute)

time_off (aind_behavior_services.calibration.olfactometer.CalibrationParameters attribute) time_on (aind_behavior_services.calibration.olfactometer.CalibrationParameters attribute) timestamp (aind_behavior_services.data_types.SoftwareEvent attribute) timestamp_source (aind_behavior_services.data_types.SoftwareEvent attribute) TimestampSource (class in aind_behavior_services.data_types) treadmill (aind_behavior_services.calibration.treadmill.CalibrationRig attribute)

U

union_schema() (aind_behavior_services.utils.CustomGenerateJsonSchema method)

utcnow() (in module aind_behavior_services.utils)

V

valid_domain (aind_behavior_services.calibration.water_valve.WaterValveCalibrationOutput attribute) validate_brake_lookup_calibration() (aind_behavior_services.calibration.treadmill.TreadmillCalibrationOutput class method) valve_open_interval (aind_behavior_services.calibration.water_valve.CalibrationParameters attribute) (aind_behavior_services.calibration.water_valve.Measurement attribute) valve_open_time (aind_behavior_services.calibration.water_valve.CalibrationParameters attribute) (aind_behavior_services.calibration.water_valve.Measurement attribute) version (aind_behavior_services.AindBehaviorTaskLogicModel attribute) (aind_behavior_services.base.SchemaVersionedModel attribute) (aind_behavior_services.calibration.aind_manipulator.CalibrationLogic attribute) (aind_behavior_services.calibration.aind_manipulator.CalibrationRig attribute) (aind_behavior_services.calibration.load_cells.CalibrationLogic attribute) (aind_behavior_services.calibration.load_cells.CalibrationRig attribute) (aind_behavior_services.calibration.olfactometer.CalibrationLogic attribute) (aind_behavior_services.calibration.olfactometer.CalibrationRig attribute) (aind_behavior_services.calibration.treadmill.CalibrationLogic attribute) (aind_behavior_services.calibration.treadmill.CalibrationRig attribute) (aind_behavior_services.calibration.water_valve.CalibrationLogic attribute) (aind_behavior_services.calibration.water_valve.CalibrationRig attribute) (aind_behavior_services.data_types.DataTypes attribute) (aind_behavior_services.session.AindBehaviorSessionModel attribute)

W

water_weight (aind_behavior_services.calibration.water_valve.Measurement attribute) weight (aind_behavior_services.calibration.load_cells.MeasuredWeight attribute)

weight_lookup (aind_behavior_services.calibration.load_cells.LoadCellCalibrationOutput attribute) weight_measurement (aind_behavior_services.calibration.load_cells.LoadCellCalibrationInput attribute) wheel_diameter (aind_behavior_services.calibration.treadmill.TreadmillCalibrationOutput attribute)

X

X (aind_behavior_services.calibration.aind_manipulator.Axis attribute)

x (aind_behavior_services.calibration.aind_manipulator.ManipulatorPosition attribute)

Y

Y1 (aind_behavior_services.calibration.aind_manipulator.Axis attribute) y1 (aind_behavior_services.calibration.aind_manipulator.ManipulatorPosition attribute)

Y2 (aind_behavior_services.calibration.aind_manipulator.Axis attribute) y2 (aind_behavior_services.calibration.aind_manipulator.ManipulatorPosition attribute) YAML (aind_behavior_services.utils.BonsaiSgenSerializers attribute)

Z

Z (aind_behavior_services.calibration.aind_manipulator.Axis attribute)

z (aind_behavior_services.calibration.aind_manipulator.ManipulatorPosition attribute)